2009 Annual Science Report
Massachusetts Institute of Technology Reporting | JUL 2008 – AUG 2009
Executive Summary
Molecular and Fossil Records of Complex Life
During the reporting period, members of the MIT Team of the NAI have been investigating aspects of the molecular records of animal evolution. We do this through complementary studies of the genomes of modern taxa and the ancient organic molecules preserved in sedimentary rocks. In the Jacobs laboratory, studies of the jellyfish Aurelia are yielding greater understanding of the evolution of sensory and neural systems in the various life history stages of Cnidaria, the most basal branch of animals having well-established multimodal sensory systems and neural organization. Studies of Neanthes, a Polychaete worm, are yielding insights into the basal evolution of sensory organization in the Bilateria. These observations are shaping a better understanding of shared aspects of gene regulation of sensory organization in Cnidaria and Bilateria, and the discretely different modes of sensory organization and neural complexity found ... Continue reading.
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Roger Summons
NAI, ASTEP, ASTID, Exobiology -
TEAM Active Dates:
11/2007 - 10/2012 CAN 4 -
Members:
43 (See All) - Visit Team Page
Project Reports
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Timscales of Events in the Evolution and Maintenance of Complex Life
This project involves high precision dating of major events in earth history. Using the decay of uranium (U) to lead (Pb) in the mineral zircon we are able to date 600 million year old rocks to ± less than 1 millon years. Such precision allows us to investigate rates of change in the ancient past from climate to evolution.
ROADMAP OBJECTIVES: 4.1 6.1 -
Astrobiological Exploration of Mars
NASA spacecraft have discovered both chemical and physical evidence that liquid water once flowed on the martian surface. Close examination of the images and spectroscopic data from these spacecraft, and understanding what they tell us, are critical to selecting the best sites for future rover missions. This project aims to maximise the knowledge gained from orbiting and landed spacecraft and apply it effectively in future planning and execution of new missions.
The key questions for astrobiology are not so much “was water present?” as “what were its properties?” and “How long did it persist?” Using thermodynamic calculations, one can approach both questions, using mineral identifications made by the MER rovers and CRISM. We find that waters at Gusev and Meridiani planum grew extremely salty as evaporation proceeded, reaching conditions that would challenge known life on Earth. We also learn that in a number of places on the martian surface, minerals deposited billions of years ago as a result of water-rock interactions have seen little or no water since that time.
ROADMAP OBJECTIVES: 1.1 2.1 -
Paleoecology of the Mistaken Point Biota
The origins of animals has remained shrouded in mystery since the origins of paleontology, principally because of their abrupt appearance in rocks dates at around 530 Ma with little or no sign of possible antecedents in Precambrian rocks. This does not mean though that older rocks are devoid of life – indeed rocks of the last half of the Ediacaran period (~580-542 Ma) are chock full of interesting but enigmatic and unmistakably non-animal forms. Maybe the most interesting of these are the rangeomorphs, fractally-organized organic forms seemingly designed to feed on dissolved nutrients in the sea water via passive absorption across their bodies. Curiously modern sponges are also designed to feed on nutrients extracted directly from sea water, but they do so in a fundamentally different manner. Why would these rocks have one type of organization but not the other when both work equally well, all things being equal? Our recent exploration of these rock in the Mistaken Point sections of Newfoundland have revealed that one already described taxon, Thectardis, might indeed be a sponge, and as such the oldest known macroscopic animal form.
ROADMAP OBJECTIVES: 4.2 -
Origins of Multicellularity
One of the earliest events in the evolution of animals was the origin of multicellularity. By studying the closest living relatives of animals, the choanoflagellates, we can begin to reconstruct the biology of the unicellular ancestors from which all living animals evolved.
ROADMAP OBJECTIVES: 4.2 -
Modelling Planetary Albedo
What kind of environments could provide opportunities for life in general and for the advent of complex life specifically to emerge? If there were complex life present, what features would it produce? Could we remotely characterize such habitats and the features of complex life on extrasolar planets light-years away with current and future NASA missions?
These are the three main questions we work on in this part of the project.ROADMAP OBJECTIVES: 1.1 1.2 4.1 4.2 6.2 7.2 -
Environmental Oxygen and the Rise of Metazoans
We seek to understand when and how levels of oxygen rose in the environment,
and how this rise may have impacted the evolution of complex life.ROADMAP OBJECTIVES: 4.1 4.2 -
Evolution and Development of Sensory and Nervous Systems in the Basal Branches of the Animal Tree
Sensory and Nervous systems are intimately related to the complexity, motility and environmental responsiveness that characterize animal life. We examine the early evolution of animal sensory and nervous systems through investigation of neural markers, as well as developmental gene expression and function in basal branching animals, including jellyfish, polychaete worms, and sponges.
ROADMAP OBJECTIVES: 4.1 4.2 -
Genomic Relationships Among Basal Metazoans
The origin of animals, and animal complexity, requires an accurate and precise understanding of both the phylogenetic interrelationship among the earliest evolved animals and the paleoecological milieu within which they evolved. Our work has shown that sponges are indeed the first animals that evolved that still have living descendants, and that sponges are not a natural group. Instead, some sponges are more closely related to more complex animals like humans and jellyfish than they are to other sponges (e.g., bath sponges). This suggests that the origins of animal complexity is rooted in sponge paleobiology, and that the earliest animals were designed to eat bacteria and organic carbon instead of other large eukaryotes like other sponges or plants.
ROADMAP OBJECTIVES: 4.2 -
Geochemical Signatures of Multicellular Life
Organic molecules preserved in rocks provide a geological record of past organisms and processes. These complement the record left by visible organisms and can often provide information on the, otherwise invisible, microbial world. This part of the project is designed to improve our knowledge of 'molecular biosignatures’ now and in times past. This part of the project also offers a window into the presence of complex life prior to the point at which animals became large enough, or hard enough, to leave a visible record.
ROADMAP OBJECTIVES: 3.2 4.2 -
Metabolic Networks From Single Cells to Ecosystems
Metabolic networks perform some of the most fundamental functions in living cells, including energy transduction and building block biosynthesis. While these are the best characterized networks in living systems, understanding their evolutionary history and complex wiring is still a major open question in biology. Here we use mathematical models and computer simulations to understand how metabolic networks gradually evolved the degree of organization necessary to sustain complex multicellular life. In particular, we ask (i) how metabolism changed as the level of oxygen gradually rose in the atmosphere, (ii) what metabolic structures are associated with cell-cell communication, and (iii) whether general optimality principles can help understand the architecture of biochemical networks.
ROADMAP OBJECTIVES: 4.1 4.2 5.2 6.1 -
Paleontological Investigations of the Advent and Maintenance of Multicellular Life
We have focused research on functional physiological investigations of early land plants, products of an origin of complex multicellularity distinct from the events that gave rise to animals. We have been able to show show basic attributes of anatomy were modified to facilitate physiological adaptation of early land plants. We also completed a functional analysis of early multicelullar organisms that stresses the constaints imposed by diffusion and the means of circumventing them.
ROADMAP OBJECTIVES: 4.2
Education & Public Outreach
Publications
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Carr, M., Leadbeater, B. S. C., Hassan, R., Nelson, M., & Baldauf, S. L. (2008). Molecular phylogeny of choanoflagellates, the sister group to Metazoa. Proceedings of the National Academy of Sciences, 105(43), 16641–16646. doi:10.1073/pnas.0801667105
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Cockell, C. S., Kaltenegger, L., & Raven, J. A. (2009). Cryptic Photosynthesis—Extrasolar Planetary Oxygen Without a Surface Biological Signature. Astrobiology, 9(7), 623–636. doi:10.1089/ast.2008.0273
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Erwin, D. H. (2009). Climate as a Driver of Evolutionary Change. Current Biology, 19(14), R575–R583. doi:10.1016/j.cub.2009.05.047
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Erwin, D. H. (2009). Early origin of the bilaterian developmental toolkit. Philosophical Transactions of the Royal Society B: Biological Sciences, 364(1527), 2253–2261. doi:10.1098/rstb.2009.0038
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Erwin, D. H., & Davidson, E. H. (2009). The evolution of hierarchical gene regulatory networks. Nature Reviews Genetics, 10(2), 141–148. doi:10.1038/nrg2499
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Johnston, D. T., Wolfe-Simon, F., Pearson, A., & Knoll, A. H. (2009). Anoxygenic photosynthesis modulated Proterozoic oxygen and sustained Earth’s middle age. Proceedings of the National Academy of Sciences, 106(40), 16925–16929. doi:10.1073/pnas.0909248106
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Kaltenegger, L., & Sasselov, D. (2009). DETECTING PLANETARY GEOCHEMICAL CYCLES ON EXOPLANETS: ATMOSPHERIC SIGNATURES AND THE CASE OF SO 2. The Astrophysical Journal, 708(2), 1162–1167. doi:10.1088/0004-637x/708/2/1162
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Kaltenegger, L., & Traub, W. A. (2009). TRANSITS OF EARTH-LIKE PLANETS. The Astrophysical Journal, 698(1), 519–527. doi:10.1088/0004-637x/698/1/519
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Kaltenegger, L., Selsis, F., Fridlund, M., Lammer, H., Beichman, C., Danchi, W., … White, G. J. (2010). Deciphering Spectral Fingerprints of Habitable Exoplanets. Astrobiology, 10(1), 89–102. doi:10.1089/ast.2009.0381
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Klitgord, N., & SEGRÈ, D. (2010). THE IMPORTANCE OF COMPARTMENTALIZATION IN METABOLIC FLUX MODELS: YEAST AS AN ECOSYSTEM OF ORGANELLES. Genome Informatics 2009. doi:10.1142/9781848165786_0005
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Krakauer, D. C., Page, K. M., & Erwin, D. H. (2009). Diversity, Dilemmas, and Monopolies of Niche Construction. The American Naturalist, 173(1), 26–40. doi:10.1086/593707
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Love, G. D., Grosjean, E., Stalvies, C., Fike, D. A., Grotzinger, J. P., Bradley, A. S., … Summons, R. E. (2009). Fossil steroids record the appearance of Demospongiae during the Cryogenian period. Nature, 457(7230), 718–721. doi:10.1038/nature07673
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Marshall, C. R., & Jacobs, D. K. (2009). Flourishing After the End-Permian Mass Extinction. Science, 325(5944), 1079–1080. doi:10.1126/science.1178325
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Metz, J. M., Grotzinger, J. P., Mohrig, D., Milliken, R., Prather, B., Pirmez, C., … Weitz, C. M. (2009). Sublacustrine depositional fans in southwest Melas Chasma. Journal of Geophysical Research: Planets, 114(E10), n/a–n/a. doi:10.1029/2009je003365
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Nakanishi, N., Hartenstein, V., & Jacobs, D. K. (2009). Development of the rhopalial nervous system in Aurelia sp.1 (Cnidaria, Scyphozoa). Dev Genes Evol, 219(6), 301–317. doi:10.1007/s00427-009-0291-y
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Nakanishi, N., Yuan, D., Jacobs, D. K., & Hartenstein, V. (2008). Early development, pattern, and reorganization of the planula nervous system in Aurelia (Cnidaria, Scyphozoa). Dev Genes Evol, 218(10), 511–524. doi:10.1007/s00427-008-0239-7
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Pearson, A., Leavitt, W. D., Sáenz, J. P., Summons, R. E., Tam, M-M., & Close, H. G. (2009). Diversity of hopanoids and squalene-hopene cyclases across a tropical land-sea gradient. Environmental Microbiology, 11(5), 1208–1223. doi:10.1111/j.1462-2920.2008.01817.x
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Riehl, W. J., Krapivsky, P. L., Redner, S., & Segrè, D. (2010). Signatures of Arithmetic Simplicity in Metabolic Network Architecture. PLoS Computational Biology, 6(4), e1000725. doi:10.1371/journal.pcbi.1000725
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Sperling, E. A., Peterson, K. J., & Pisani, D. (2009). Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa. Molecular Biology and Evolution, 26(10), 2261–2274. doi:10.1093/molbev/msp148
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Sperling, E. A., Robinson, J. M., Pisani, D., & Peterson, K. J. (2010). Where’s the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Myr missing Precambrian fossil record of siliceous sponge spicules. Geobiology, 8(1), 24–36. doi:10.1111/j.1472-4669.2009.00225.x
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Squyres, S. W., Knoll, A. H., Arvidson, R. E., Ashley, J. W., Bell, J. F., Calvin, W. M., … Yingst, R. A. (2009). Exploration of Victoria Crater by the Mars Rover Opportunity. Science, 324(5930), 1058–1061. doi:10.1126/science.1170355
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Tosca, N. J., & Knoll, A. H. (2009). Juvenile chemical sediments and the long term persistence of water at the surface of Mars. Earth and Planetary Science Letters, 286(3-4), 379–386. doi:10.1016/j.epsl.2009.07.004
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Tosca, N. J., Knoll, A. H., & McLennan, S. M. (2008). Water Activity and the Challenge for Life on Early Mars. Science, 320(5880), 1204–1207. doi:10.1126/science.1155432
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Yuan, D., Nakanishi, N., Jacobs, D. K., & Hartenstein, V. (2008). Embryonic development and metamorphosis of the scyphozoan Aurelia. Dev Genes Evol, 218(10), 525–539. doi:10.1007/s00427-008-0254-8
- Davis, G.K., Dietrich, M.R. & Jacobs, D.K. (2009). HOMEOTIC MUTANTS AND THE ASSIMILATION OF DEVELOPMENTAL GENETICS INTO THE EVOLUTIONARY SYNTHESIS, 1915-1952. Transactions of the American Philosophical Society, 99: 133-154.
- Fu, R., Sasselov, D. & O’Conell , R. (In Press). The Astrophysical Journal.
- Milliken, R., Swayze, G., Arvidson, R., Bishop, J., Clark, R., Ehlmann, B., Green, R., Grotzinger, J., Morris, R., Murchie, S., Mustard, J. & Weitz, C. (2008). Opaline silica in young deposits on Mars. Geology, 36.
- Ventura, G.T., Kenig, F., Kelly, A.E. & Summons, R.E. (2009). Biomarker patterns of the Late Neoproterozoic Kwagunt Formation, Chuar Group (~800-742 Ma), Grand Canyon USA – A record of biogeochemical instability prior to the Cryogenian Period. Organic Geochemistry, In Review.
2009 Teams
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Arizona State University
Carnegie Institution of Washington
Georgia Institute of Technology
Massachusetts Institute of Technology
Montana State University
NASA Ames Research Center
NASA Goddard Space Flight Center
NASA Jet Propulsion Laboratory - Icy Worlds
NASA Jet Propulsion Laboratory - Titan
Pennsylvania State University
Rensselaer Polytechnic Institute
University of California, Berkeley
University of Colorado, Boulder
University of Hawaii, Manoa
University of Wisconsin
VPL at University of Washington