Notice: This is an archived and unmaintained page. For current information, please browse

2004 Annual Science Report

University of California, Los Angeles Reporting  |  JUL 2003 – JUN 2004

Whole Genome Comparisons and the Evolution of Methane and Sulfur Metabolisms

4 Institutions
3 Teams
0 Publications
0 Field Sites
Field Sites

Project Progress

Sorel Fitz-Gibbon collaborated with Todd Lowe (University of California Santa Cruz) on functional analysis of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum using full-genome DNA microarrays. The analysis suggests that a set of key sulfur metabolism genes found in this organism function in the reductive direction, reducing sulfate, rather than the proposed alternative, sulfur species oxidation. Additionally, the demonstrated regulation of these genes in response to oxygen suggests that frameshift disruptions found for one key enzyme are due to recent events. This together with the report of a sulfate reduction phenotype in the crenarchaeon Caldivirga maquilingensis (Itoh et al, 1999) suggests that sulfate reduction may be far more common among the Crenarchaeota than previously assumed.

Sorel Fitz-Gibbon and Christopher House Pennsylvania State University (PSU) continued their collaboration using whole genome sequences to study phylogenetic relationships. Initial steps have been taken to include incomplete genome sequences into their analyses. This will allow perhaps hundreds of additional organisms to be represented, significantly increasing the diversity and depth of resolution of the resulting trees.

    Sorel Fitz-Gibbon
    Project Investigator
    Christopher House

    Objective 4.1
    Earth's early biosphere

    Objective 4.2
    Foundations of complex life

    Objective 6.1
    Environmental changes and the cycling of elements by the biota, communities, and ecosystems